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(2006 - 2010)
MPScope 2.0: A computer system for two-photon laser scanning microscopy with
concurrent plasma-mediated ablation and electrophysiology.
Q.-T. Nguyen, E. M. Dolnick, J. Driscoll and D. Kleinfeld. In Methods for In Vivo Optical
Imaging, Second Edition, R. Frostig, editor, 2009, CRC Press,
in press.
PDF (0.9 Mb)
In vivo two-photon laser scanning microscopy with concurrent
plasma-mediated ablation: Principles and hardware realization.
P. S. Tsai and D. Kleinfeld. In Methods for In Vivo Optical Imaging,
Second Edition, R. Frostig, editor, 2009, CRC Press, in press.
PDF (4.6 Mb)
Application of spectral methods to representative data sets
in electrophysiology and functional neuroimaging.
D. Kleinfeld. In Syllabus for Society for Neuroscience Short Course III
on ”Neural Signal Processing: Quantitative Analysis of Neural Activity”, 2008,
Society for Neuroscience. pp. 21-34;
PDF (1.0 Mb);
full syllabus PDF (3.7 Mb);
presentation PDF (34.4 Mb)
Targeted occlusion to surface and deep vessels in
neocortex via linear and nonlinear optical absorption.
D. Kleinfeld, B. Friedman, P. D. Lyden and A. Y. Shih. In Animal
Models of Acute Neurological Injuries, J. Chen, Z. Xu, X.-M. Xu
and J. Zhang, editors, 2008, Contemporary Neuroscience Series,
The Humana Press, in press. PDF
(2.1 Mb)
Vibrissa movement, sensation and sensorimotor control.
D. Kleinfeld. In The New Encyclopedia of Neuroscience, L. Squire,
editor-in-chief, T. Albright, F. Bloom, F. Gage, N. Spitzer, senior
editors, 2008, Elsevier, in press. PDF
(2.3 Mb)
Two-photon laser scanning microscopy as a tool to study cortical vasodynamics
under normal and ischemic conditions. A. Devor, A. Y. Shih, P. S. Tsai,
P. Blinder, P. Tian and D. Kleinfeld. In Imaging the Brain with
Optical Methods, A. Roe, editor, 2008, Springer Press, in press. PDF (0.6 Mb)
Pioneering applications of two-photon microscopy
to mammalian neurophysiology: Seven case studies. Q.-T.
Nguyen, G. O. Clay, N. Nishimura, C. B. Schaffer, L. F. Schroeder,
P. S. Tsai and D. Kleinfeld. In Nonlinear Optical Microscopy Techniques
and Applications (B. Masters and P. So, editors), 2008, Oxford
Press, Ch. 28. PDF
(1.4 Mb)
Spike Sorting. D. N. Hill, D. Kleinfeld and
S. B. Mehta. In Observed Brain Dynamics by P. P. Mitra and H.
Bokil, 2007, Oxford Press. PDF
(1.8 Mb)
(2001 - 2005)
Spectral analysis for dynamical imaging data.
B. Pesarian, A. Sornborger, N. Nishimura, D. Kleinfeld and P.P.
Mitra. In Imaging in Neuroscience and Development: A Laboratory
Manual (R. Yuste and A. Konnerth, editors), 2005, Cold Spring
Harbor Laboratory Press, NY, 57:439-444. PDF
(1.2 Mb)
All-optical, in situ histology of neuronal tissue with
femtosecond laser pulses. P. S. Tsai, B. Friedman, C.
B. Schaffer, J. A. Squier and D. Kleinfeld. In Imaging in Neuroscience
and Development: A Laboratory Manual (R. Yuste and A. Konnerth,
editors), 2005, Cold Spring Harbor Laboratory Press, NY, 102:815-826
PDF (1.6 Mb)
Two-photon imaging of cortical microcirculation.
D. Kleinfeld and W. Denk. In Imaging in Neuroscience and Development:
A Laboratory Manual (R. Yuste and A. Konnerth, editors), 2005,
Cold Spring Harbor Laboratory Press, NY, 93:701-705. PDF
(0.5 Mb)
Interferometric detection of action potentials in vitro.
A. LaPorta and D. Kleinfeld. In Imaging in Neuroscience and Development:
A Laboratory Manual (R. Yuste and A. Konnerth, editors), 2005,
Cold Spring Harbor Laboratory Press, NY, 72:539-543. PDF
(0.3 Mb)
Detection of action potentials in vitro by changes in
refractive index. D. Kleinfeld and A. LaPorta. In Light
Scattering Imaging of Neural Tissue Function (D. M. Rector and
J. S. George, editors), 2005, Humana Press, in press. PDF
(0.4 Mb)
Cortical blood flow through individual capillaries in
rat vibrissa S1 cortex: Stimulus induced changes in flow are comparable
to the underlying fluctuations in flow. D. Kleinfeld.
In Brain Activation and Cerebral Blood Flow Control (M. Tomita,
editor), 2002, Excerpta Medica, International Congress Series
1235, Elsevier Science. PDF
(1.3 Mb)
Principles, design and construction of a two photon scanning
microscope for in vitro and in vivo studies. P. S. Tsai,
N. Nishimura, E. J. Yoder, A. White, E. Dolnick and D. Kleinfeld.
In Methods for In Vivo Optical Imaging (R. Frostig, editor), 2002,
CRC Press, pp. 113-171.
PDF (2.5 Mb)
(1996 - 2000)
Two-photon imaging of neocortical microcirculation.
D. Kleinfeld and W. Denk. In Imaging Neurons: A Laboratory Manual
(R. Yuste, F. Lanni, and A. Konnerth, editors), 1999, Cold Spring
Harbor Laboratory Press, NY, pp. 23.1-23.15. PDF
(1.3 Mb)
Analysis of dynamic optical imaging data. P.
P. Mitra, B. Pesaran, and D. Kleinfeld. In Imaging Neurons: A
Laboratory Manual (R. Yuste, F. Lanni, and A. Konnerth, editors),
1999, Cold Spring Harbor Laboratory Press, NY, pp. 9.1-9.9. PDF
(0.8 Mb)
(1991 - 1995)
Phase coherence and computation in a neural network of coupled
oscillators. H. Sompolinsky, D. Golomb and D. Kleinfeld.
In Nonlinear Dynamics and Neuronal Networks (H. G. Schuster, editor),
1991, VCH, Weinheim, pp. 113-130.
PDF
(1.1 Mb)
Small nervous systems and neural network models.
D. Kleinfeld, H. J. Chiel and H. Sompolinsky. In Nonlinear Dynamics
and Neuronal Networks (H. G. Schuster, editor), 1991, VCH, Weinheim,
pp. 77-109.
PDF (2.0 Mb)
(1986 - 1990)
Associative network models for central pattern generators.
D. Kleinfeld and H. Sompolinsky. In Methods in Neuronal Modeling:
From Synapses to Networks (C. Koch and I. Segev, editors), 1989,
MIT Press, Cambridge, MA, pp. 195-246.
PDF
(6.0 Mb)
Electron transfer reactions in bacterial photosynthesis:
Charge recombination kinetics as a structure probe. G.
Feher, M. Y. Okamura and D. Kleinfeld. In Protein Structure: Molecular
and Electronic Reactivity (R. Austin, B. Chance and H. Frauenfelder,
editors), 1987, Springer-Verlag, New York, NY, pp. 399-421.
PDF
(1.7 Mb) Reproduced in "Biological Physics" (E.V. Mielczarek,
E. Greenbaum, and R.S. Knox, editors), 1993, American Institute
of Physics, New York, NY, pp. 388-410.
(1981 - 1985)
Quinone binding sites in reaction centers from photosynthetic
bacteria. M. Y. Okamura, R. J. Debus, D. Kleinfeld and
G. Feher. In Function of Quinones in Energy Conserving Systems
(B. L. Trumpower, editor), 1982, Academic Press, New York, NY,
pp. 299-317.
PDF (1.3 Mb)
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